Monday, August 28, 2017

Description of the Project



We are going to predict neuronal connections from calcium imaging data by this project. First we should understand basics of neurons and neural networks. Then we are trying to predict the connections between neurons. To do that, we are using calcium imaging data sets. Then we can make an algorithm that can predict the neuronal connections. Later we are going to test that algorithm by given data sets.


The neuron is the basic working unit of the brain. It is a specialized cell designed to transmit information to other nerve cells such as muscle, or gland cells. Nervous system consists of millions of neurons. They transmit information to other nerve cells. Most neurons have a cell body, an axon, and dendrites. When neurons receive or send messages, they transmit electrical impulses along their axons. Adult human brain has about a trillion neurons. So it is not an easy task to find the connectivity among them. We will have to use special methods to map the connectivity. 


Connectomics is the production and study of comprehensive maps of connections within an organism's nervous system. It is hard to trace them out physically even with powerful microscopes. Florescent calcium ions can be used to observe the firing of neurons. So we can predict the connections between neurons using calcium fluorescence data. Using those data we are going to create algorithm to predict the map of connections between neurons.  After creating the algorithm we can check it by using calcium imaging data sets from small networks of about hundreds neurons to millions of neurons.